Hopkins Microbiology Course Morning Lecture Schedule Hopkins Marine Station, Agassiz 10 Week of Monday, June 13, 2011
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1 Week of Monday, June 13, 2011 Friday, June 17 2:00 PM Course Overview: Microbe-Environment Interactions and Microbial Diversity, Introduction to Vibrio Population Genetics Experiment, Microbial mats 4:00 pm Safety Training (Boat Works) Chris Patton, HMS 5:00 pm BBQ Saturday, June 18 7:00 AM Introduction to the Elkhorn Slough & Field trip Chris, all 1:30 PM Microscopy Alfred, all Start enrichments Sunday, June 19 7:00 AM Field trip to Pt Lobos & Hopkins Marine Station sites All 10:00 AM Thermodynamics and Mechanisms of Energy Conservation Alfred
2 Week of Monday, June 20, 2011 Monday June 20 8:30 AM Microbial Life and Metabolic Pathways Alfred 10:00 AM Isolation of Microorganisms (Growth, and Selection) Alfred 1:00 PM Microbial Life as a Phototroph Alfred evening 5 min student chalk board talks Tuesday, June 21 8:30 AM Coral Reef Microbiology Forest Rohwer, CSSD 10:00 AM Physiology and Ecology of Microbes of the Sulfur Cycle Alfred evening Large Scale Fermentation Experiment Wednesday, June 22 8:30 AM Cyanobacteria and Marine Photosynthesis Arthur Grossman, Stanford & Carnegie Institution 10:00 AM Genomics of Phototrophic Microbial Mats Devaki Bhaya, Stanford & Carnegie Institution 2:00 PM Microbial Metal Cycling Chris Thursday, June 23 8:30 AM Fermenters Alfred 10:00 AM Syntrophs Alfred 11:30 AM Microbial Nitrogen Cycling Chris Friday, June 24 8:30 AM Methanogens Rolf Thauer, MPI Marburg 10:00 AM Food from the Fire: How the Host Response Feeds Salmonella Andreas Bäumler, UC Davis Saturday, June 25 MiniSymposium 8:30 AM Flavin-based Electron Bifurcation: A Novel Mechanism of Energy Conservation in Anaerobes Rolf Thauer, MPI Marburg Catalytic Promiscuity and Serendipitous Metabolic Pathways Genetics and Genomics of Oceanic N 2 -fixing Cyanobacteria Shelley Copley, University of Colorado Jonathan Zehr, UC Santa Cruz
3 Week of Monday, June 27, 2011 Monday, June 27 8:30 AM Microbial Nitrogen Cycling Chris 10:00 AM Marine Crenarchaeota Chris Tuesday, June 28 8:30 AM Biology of Marine Vibrios Ned Ruby, UW Madison 10:00 AM Molecular Interactions in Vibrio fisheri-euprymna Symbiosis Wednesday, June 29 8:30 AM Fe(III) and Mn(IV)-reducing Bacteria Alfred 10:00 AM Life in a Dry World Mary Firestone, UC Berkeley 4:00 PM Molecular Probe Technologies and Ocean Observatories Chris Scholin, MBARI Thursday, June 30 8:30 AM Isotopic Signals of Microbial Processes John Hayes, WHOI, Woods Hole 10:00 AM Dehalococcoides and Reductively Dehalogenating Microbes Alfred Friday, July 1 8:30 AM Changing Views on Marine Microbes Jed Fuhrman, USC 10:00 AM Anaerobic Microbial Nitrogen Cycling Chris Saturday, July 2 8:00 AM depart Microfluidics experiment and single cell genome amplification Paul Blainey, Stanford (Field trip to Stanford)
4 Week of Monday, July 4, 2011 Monday, July 4 8:30 AM Evolution and Population Genetics Paul 10:30 AM Biological Diversity through the Eyes of an Ecologist Tadashi Fukami Stanford University Tuesday, July 5 8:30 AM Population Genetics and Genomics Jeffrey Lawrence, U. Pittsburgh 7:30 PM The Origin of Bacterial Species Jeffrey Lawrence, U. Pittsburgh Wednesday, July 6 8:30 AM Evolution in Bacterial Populations Paul 10:00 AM Evolution in Bacterial Populations Paul Thursday, July 7 8:30 AM Origin and Maintenance of Diversity Paul 2:00 PM Origins of Life John, Paul, Alfred 7:30 PM Origins of Life Student discussion Friday, July 8 8:30 AM Testing Spatially and Temporarily Explicit Hypotheses about Microbial Community Structure Rob Knight, U Colorado 10:00 AM Combining Graphs, Trees and Distances for Complex Communities Susan Holmes, Stanford 1:00 PM Selection, Mutation and Bacterial Growth John Roth, UC Davis Saturday, July 9 MiniSymposium 8:30 AM The within-host Population and Evolutionary Dynamics of Antibiotic Treatment Bruce Levin, Emory University Tracking the Units of Microbial Communities with Metagenomics A Species Concept for Asexual Organisms Kostas Konstantinidis Georgia Tech John Roth, UC Davis
5 Week of Monday, July 11, 2011 Monday, July 11 8:30 AM Comparative Genomics and Pathway Tools Tutorial (computer room) Kostas Konstantinidis, Georgia Tech, Ian 5:00 PM General Group meeting All Tuesday, July 12 8:30 AM Pathway Tools Tutorial (computer room) Ian, Kostas 2:00 PM Behind the Scene, Tour through Monterey Bay Aquarium Chris Harrold Monterey Bay Aquarium 5:00 PM General Group meeting All Wednesday, July 13 8:30 AM The Biogeochemistry of the Monterey Bay Ken Johnson, MBARI 7:00 PM General Group meeting All Thursday, July 14 PM Packing the lab Evening Student presentations Enrichments All Friday, July 15 8:30 AM Student project presentations Clone library, Vibrio population genetics, Vibrio genomics, Experimental Evolution 1PM continuing into Course evaluations, packing the truck Graduation and Farewell Party
Hopkins Microbiology Course Morning Lecture Schedule Hopkins Marine Station, Agassiz 10 Week of Monday, June 17, 2013
Week of Monday, June 17, 2013 Friday, June 21 2:00 PM Course Overview: Microbe-Environment Interactions and Microbial Diversity, Introduction to Vibrio Population Genetics Experiment, Microbial mats 4:00
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