1 MOLECULAR PHYLOCENETICS AND EVOLUTION Vol. 4. No.1. March. pp Origin of West Indian Populations of the Geographically Widespread Boa Corallus enydris Inferred from Mitochondrial DNA Sequences ROBERT w. HENDERSON AND S. BLAIR HEDGES* Section of Vertebrate Zoology, Milwaukee Public Museum, 800 West Wells Street, Milwaukee, Wisconsin ; and Department of Biology, 208 Mueller Lab, Penn State Unil/ersity. University Park, Pennsylvania Received June ; revised Sept~'mber Corallus enydris (Serpentes: Boidae: Boinae) is an arboreal snake with an extremely wide mainland distribution from southern Costa Rica to southeastern Brazil arid is one of two boine species that has invaded the Lesser Antilles (Grenada Bank and St. Vincent). Mitochondrial DNA sequences of samples from seven geographically disparate localities provided evidence of phylogenetic relationships. The monophyly of C. enydris is corroborated and a major dichotomy between northern samples (Panama and Trinidad) and southern samples (Guyana, Peru, southeastern Brazil) was found and corresponds to the two currently recognized subspecies. Unexpectedly, the two samples from the West Indies (southern Lesser Antilles) cluster with the southern rather than the geographically closer northern samples (e.g., Trinidad). The results imply a fairly recent Guianan-Amazonian origin of West Indian populations. tl 1986 Academic Pre... lac. INTRODUCTION The neotropical mainland boine snake (Serpentes: Boidae: Boinae) fauna, currently comprised of 10 species, includes five species with widely sympatric ranges in Amazonia and the Guianas: Boa constrictor, Corall us caninus, Corollus enydris, Epicrotes cenchria, and Eunectes murinus. The ranges of B. constrictor, C. enydris, and E. cenchria are even broader, extending from Mexico and/or southern Central America to southeastern Brazil and/or northern Argentina; only B. constrictor and C. enydris have invaded the West Indies. Only C. caninus is regarded as monotypic, whereas B. constrictor and E. cenchria have 9 or 10 currently recognized subspecies. They are poorly defined geographically, taxonomically, and systematically, although recent advances have been made (e.g., Tolson, 1987; Kluge, 1991) or are in progress (R.W.H., in preparation). C. enydris, an arboreal species ranging from southern Costa Rica to southern Brazil, has two currently recognized subspecies (Fig. 1): C. e. enydris which occurs throughout most of the Amazonian lowlands, the Guianas, and the Atlantic coastal forest of Brazil and C. e. cooki which occurs in southern Central America, northern Colombia, northern Venezuela (including Isla Margarita), Trinidad and Tobago, and the Lesser Antilles as far north as St. Vincent. C. enydris is more variable in color and pattern than any other boine (e.g., Figs. 1-7 in Henderson, 1993). In this paper we present data regarding phylogenetic relationships in C. enydris based on mitochondrial DNA sequences of sample~ from seven geographically disparate localities and evidence for the origin of the West Indian populations. MATERIALS AND METHODS DNA was extracted from small amounts «50 mg) of liver or red blood cells from the following specimens of C. enydris: MPM (Milwaukee Public Museum) 26290, Panama, Canal Zone; MPM 23596, St. Vincent, St. Patrick, 2.0 miles ENE of Layou; MPM 25445, Grenada, St. Andrew, Pearls; MPM 23595, Trinidad, Hollis Reservoir; LSUMZ (Louisiana State University Museum of Zoology) 43139, Guyana, Jonestown; KU <University of Kansas) , Peru, Cuzco, Cuzco Amazonica; and IB (lnstituto Butantan) 55042, Brazil, Siio Paulo, 19uape (Fig. 1). Considering the broad range of Corollus enydris, we acknowledge the relatively small number of samples in our analysis. Those we have, however, are geographically strategic (Fig. 1), being near (1) the northern edge of the mainland range (Panama), (2) the southern end of the mainland range (Atlantic coastal forest in southeastern Brazil), and (3) the western edge in the Upper Amazon of Peru and from (4) two West Indian islands, including one from the northernmost edge of the range (St. Vincent) and (5) Trinidad. The Trinidad sample (C. e. cooki) is critical because of its geographic proximity to the Lesser Antilles and because of its morphological similarity to Venezuelan populations occurring between /95 $6.00 Copyright It 1995 by Academic Press. Inc. All rights of reproduction in any fonn reserved. 88
2 ORIGIN OF ANTILLEAN POPULATIONS OF THE BOA Corallus enydris 89 o KM 1'1 1,1 I I I I FIG. 1. Geographic distribution of the boid snake Corallus enydris, showing the locations of samples used in this study. The more northern, darker stippling indicates the range of C. e. cooki, and the more southern, lighter stippling indicates the range of C. e. enydris. The numbered localities indicate sites represented in our sample: (1) Panama, (2) St. Vincent, (31 Grenada, (4) Trinidad, (5) Guyana, 161 southern Peru, and (7) southeastern Brazil. See Materials and Methods for more precise locality data. the Caribbean coast and the Rio Orinoco (Henderson and Boos, 1993). Despite long distances between Guianan-Amazonian sample localities on the South American mainland (Guyana-Brazil, ca km; Guyana Peru, ca km) and the potential for wide rivers (e.g., Rio Amazonas) to act as barriers to dispersal, it is likely that the Guianan-Amazonian range (including Atlantic coastal forest in Brasil) of C. enydris is contiguous (Fig. 1; Henderson, 1993). An individual of C. caninus (Audubon Zoo 5902, locality unknown) was included for comparison, and the boid Epicrates striatus (S.B.H. Laboratory No , Dominican Republic, Samana, 7 km S. of Las Galeras) was included for the purpose of rooting the tree. Methods of DNA extraction, amplification, and dideoxy sequencing are described elsewhere (Hedges et al., 1991; Hedges and Bezy, 1993). Two oligonucleotide primers were used to amplify and sequence both complementary strands ofa 307-bp region of the mitochondrial cytochrome b gene (Hedges et az., 1992). In some cases, two other primers designed to amplify the same region (Kocher et al., 1989) also were used. Aerosolresistant tips were used in preparation of reagents in order to reduce the probability of contamination. There were no insertions or deletions and therefore alignment was straightforward. Phylogenetic analysis (distance and parsimony) was performed with MEGA (Kumar et az., 1993). The Jukes-Cantor (1969) distance was used with the neighbor-joining method (Saitou and Nei, 1987), and statistical confidence of the nodes on the trees was inferred by a t test for branch-length significance from zero, expressed as the complement of the probability, or confidence probability (CP; Rzhetsky and Nei, 1992; Kumar et az., 1993), and by the bootstrap method (Felsenstein, 1985) using 2000 replications (Hedges, 1992). Statistical significance was assessed at the 95% level. Maximum parsimony analysis was done with the modified branch and bound algorithm in MEGA. Sites containing ambiguities were not included in the analyses. RESULTS A total of 271 aligned sites (nine taxa) could be scored from autoradiograms and were used in the phylogenetic analyses (Fig. 2). Of these, 74 were variable and 28 were parsimony sites (those sites informative under the conditions of parsimony). Pairwise corrected distances among the specimens of C. enydris were low «0.08), supporting the use of a Jukes-Cantor distance rather than a more complicated correction (Nei, 1991).
3 90 HENDERSON AND HEDGES 1 E.strfetua 2 cenf,.. 3 p.".. 4 Trinided 5 Guyene 6 Bruil 8 Grenldli 1 E.strfetua 2 cenl,.. 3 Penema 4 Trinided 5 Guyena 6 Irull 8 Grenada 1 E.strletus 2 cenlnus 3P_ 6 Brezil 8 Grenade 9 St.Vincent 1 E.str!etus 2 caninus 3 P IINIIIIIl 6 Brazil a Grenade 46 C TTC GGA TCC ATA CTA CTT GCT TGe TTA TCT CTA CAA CTA CTT ACA T r T C A.C T.C. G.C G A G G.. A..... A... A.. A... A.,...C A.C C. G.C T.G G G A.e C. G.e T... G A C A.C CG G.C G G C A.C CG G.C G G C A.C CG G.C G....G C A.C CG G.C G.G G... C A.C CG G.C G... G 91 GGA TTC TTC TTA GeT GTA CAC TAC ACA GCA MT ATT MC CTA GCA C T C C T..C C G T C.. r C....C.. C G.. T... G C C....C.. C... T... G C '" C....C.. C G.. T.... C C....C.. C G.. r.. C C....C.. C G.. T.... C C....C.. C G.. r.... C C....C C G.. T TTC TCA TCT ATC ATC CAC ATT ACC CGA GAT GTC CCA TAT GGA TGA.. C G.. G... T.T...C.. C G.T G...TA.. C.. C... G.T G...TA... C.. C G.T G...TA... C.. C G.T G...TA... C.. C... G.T G...TA... C.. C G.T G...TA... C.. C '" G.T G...TA... C.. C '" 181 ATA ATA CAA MC CTT CAC GeT ArT GGG GCC TCA GTA rta TTT ATT A C A A C C C.. T.. C.. C.. A... A... C.. C.. C.. T.. C.. C.. G... A... C.. C.. C T....T C T C A A A C C C.. T.. A.. T.. C.. A... A... C.. C.. C 1 E.strietus 2 caninus 3 PaNIIIIII 6 Brazil 8 Grenada 9 St.Vincent 1 E.strietus 2 canlnus 3 p.".,.. 4 Trinic:\act 6 Brez! l 8 Grenade 226 TGT ATT TAT ATC CAT ATC GCA CGA GGC TTG TAT TAT GGG TCG TAC.. C.. C.. C... C.A.. C.. A T.. C.. C T... C... C.. C.. C.. C..... C.. C C....C.. C.. C.. C..... C.. T C T C.A.. C.. C.. T.. T.. C.. T C C.A.. C.. C.. T.. r.. C.. C.. T.. C C... C.. C.. T T.. C.. C.. T.. C T C.A.. C.. C.. T.. T.. C.. C.. T.. C... C.A.. C.. C.. T.. T 271 TTA MC AM GAA ACC TGA CTC TCA GGT ACC ACA TTA CTA ATC ATA C....A... C... T. T... C....A... G.. A... T... T... C....A A A C....A A A T r c....a..a A T.. T C....G.. A... A.. A... C.. T... T C....G.. A... A.. A... T... T C....G.. A... A.. A... T... T FIG. 2. DNA sequences of a portion of the mitochondrial cytochrome b gene in nine boid snakes: (1) Epicrates striatu8, (2) Corallus caninus, and (3-9) geographic representatives of the species C. enydris.
4 ORIGIN OF ANTILLEAN POPULATIONS OF THE BOA Corallus enydris 91 r GreNlda L St. Vincent 98/97 - Peru Panama Trinidad ' _- Corallu5 caninus \ Epicrates striatus d o.bs FIG. 3. Phylogenetic relationships of Corallus enydris from seven widely distributed localities, inferred from a neighbor'joining analysis of DNA sequences (Jukes-Cantor distance) of a portion of the mitochondrial cytochrome b gene. The numbers on the tree are statistical estimates of confidence of each node: the "confidence probability" (Rzhetsky and Nei. 1992; Kumar et oz. 1993) derived from the standard error estimate of the branch length (left of slash) and the bootstrap P value (Felsenstein, 1985) based on 2000 replications (right of slash). The West Indian boine species Epicrates striatus was used to root the tree. d, distance. A phylogenetic tree (Fig. 3) corroborates the monophyly of C. enydris (CP = 98%) and shows a major dichotomy between samples from Panama and Trinidad (79%) and those from other areas (98%). With two exceptions, this split corresponds to a morphological subdivision within the species recognized at the subspecific level. The Panama and Trinidad samples are assigned to the subspecies C. e. cooki, whereas the other samples are placed in C. e. enydris <Henderson, 1993). The exceptions are the two samples from the Lesser Antilles (St. Vincent and Grenada). Although these West Indian populations have been assigned to the subspecies C. e. cooki. they cluster strongly (98%) with the samples of C. e. enydris. The two Lesser Antillean samples cluster with a mainland population (Guyana) farther to the south rather than the geographically proximal Trinidad. The maximum parsimony analysis resulted in six equally most-parsimonius trees of length 41 (Fig. 4). All showed the same major dichotomy within C. enydris as found in the neighbor-joining analysis. DISCUSSION The most unexpected result of the DNA sequence analysis was the implication of a fairly recent Guianan-Amazonian origin of West Indian populations of C. enydris as indicated by the very close genetic relationship between those samples and Guyana. Although it is possible that this result is due to allelic relationships rather than population relationships, the latter explanation is better supported when the biogeography of the region is considered. The strong South American influence in the Grenada Bank-St. Vincent fauna is Guyana Brlzi I Peru Pa... r Trinidad Coral Ius cani"". Epicrates striatus FIG. 4. Phylogenetic relationships of Corallus enydris inferred from a maximum parsimony analysis (branch-and-bound). The tree is a strict consensus of six most-parsimonious trees, each of length 41. well-documented, but Trinidad or northern Venezuela (e.g., the Orinoco Delta), possibly via Trinidad, has been assumed to be the origin (e.g., Lescure, 1987; Lescure et al., 1991). Trinidad had a direct land connection to South America during the late Pleistocene low sea level stand (Eshelman and Morgan, 1985) and is now separated from Venezuela by about 10.5 km of water. There is no geological evidence to indicate that the Grenada Bank ever had a continental connection (Maury et al. 1990) and C. enydris almost surely reached the West Indies by overwater dispersal from South America on the South Equatorial Current. Although the Grenada Bank is situated closer to Venezuela and Trinidad (ca. 145 km) than to the Guyana coast (ca. 650 km), there is evidence for the potential overwater dispersal to the southern Lesser Antilles (the Grenada Bank and St. Vincent) from northeastern Brazil and the Guianas (e.g., the mouth of the Essequibo River in Guyana) (Guppy, 1917). The reptile fauna of the Grenada Bank and St. Vincent has a number of geographically wide-ranging species in common with Trinidad, northern Venezula, and the Guianas, but little is known regarding their relationships. In light of these preliminary results, the relationships of the West Indian and mainland populations and the current taxonomy and systematics of C. enydris must be reevaluated. ACKNOWLEDGMENTS We thank H. E. A. BOO8 (Trinidad), W. E. Duellman and J. E. Simmons [University or Kansas (KU)J. G. Puorto [lnstituto Butantan (IB)]. A. S. Rand and L. Weight (Smithsonian Tropical Research Institute), and D. Reynolds and D. Rossman [Louisiana State University Museum of Zoology ILSUMZ>] for tissue samples of Corollus and F. de Barros Molina and A. M. Young for assisting in the delivery of the samples. The West Indian samples were collected by R.W.H. with the kind permission ofthe forestry departments of8t. Vincent and Grenada. The laboratory portion of this research was supported by a grant from the National Science Foundation <DEB ) to S.B.H. Analysis of morphological variables by R.W.H. entailed many loans from many institutions; all will be acknowledged accordingly in a future publication.
5 92 HENDERSON AND HEDGES REFERENCES Eshelman, R. E., and Morgan, G. S. (1985). Tobagan recent mammals, fossil vertebrates, and their zoogeographical implications. Natl. Geog. Soc. Res. Rep. 21: Felsenstein, J. (1985). Confidence limits on phylogeneis: An approach using the bootstrap. Euolution 39: Guppy, H. B. (1917). "Plants, Seeds, and Currents in the West Indies and Az.ores," Williams and Norgate, London. Hedges, S. B. (1992). The number of replications needed for accurate estimation of the bootstrap p-value in phylogenetic studies. Mol. Biol. Euol. 9(2): Hedges, S. B., and Bezy, R. L. (1993). Phylogeny ofxantusiid lizards: Concern for data and analysis. Mol. Phylogenet. Evol. 2: Hedges, S. B., Bezy, R. L., and Maxson, L. R. (1991). Phylogenetic relationships and biogeography of xantusiid lizards inferred from mitochondrial DNA sequences. Mol. Biol. Evol. 8: Hedges, S. B., Bogart, J. P., and Maxson, L. R. (1992). Ancestry of unisexual salamanders (genus Ambystoma). Nature 356: Henderson, R. W. (1993). Corallus enydris. Cat. Am. Amphibians Reptiles 576: 1-6. Henderson, R. W., and Boos, H. E. A. (1993). "The Tree Boa (Corallus enydris) on Trinidad and Tobago," Living World, J. Trinidad & Tobago Field Naturalists Club, pp Jukes, T. H., and Cantor, C. R. (1969). Evolution of protein molecules. In "Mammalian Protein Metabolism" (H. N. Munroe, Ed.) pp , Academic Press, New York. Kluge, A. G. (1991). "Boine Snake Phylogeny and Research Cycles," Misc. Publ. Mus. Zoo!. Univ. Michigan (178): iv + 58 pp. Kocher, T. D., Thomas, W. K., Meyer, A., Edwards, S. V., Paabo, S., Villablanca, F. X., and Wilson, A. C. U989). Dynamics of mitochondrial DNA evolution in animals: Amplification and sequencing with conserved primers. Proc. Natl. Acad. Sci. USA 86: Kumar, S., Tamura, K., and Nei, M. (1993). MEGA, molecular evolutionary genetic analysis software for microcomputers. CABIOS 10: Lescure, J. (1987). Le peuplement en Reptiles et Amphibiens des Petites Antilles. Bull. Soc. Zool. France 112: Lescure, J., Jeremie, J., Lourenc;o, W., Mauries, J.-P., Pierre, J., Bastre, C., and Thibaud, J. M. (1991). Biogeographie et insularite l'exerr..ple des Petites Antilles. C. R. Soc. Biogeogr. 87: Maury, R. C., Westbrook, G. K., Baker, P. E., Bouysse, Ph., and Westercamp, D. (1990). Geology of the Lesser Antilles. In "The Caribbean Region" (G. Dengo and J. E. Case, Eels.), Vol. H., pp , Geo!. Soc. America, Geol. of North America, Boulder, CO. Nei, M. (1991). Relative efficiencies of different tree-making methods for molecular data. In "Phylogenetic Analysis orona Sequences" (M. M. Miyamoto and J. Cracraft, Eds.), pp , Oxford Univ. Press, Oxford. Rzhetsky, A., and Nei, M. (1992). A simple method for estimating and testing minimum-evolution trees. Mol. Biol. Euol. 4: Saitou, N., and Nei, M. (1987). The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol. Bi()/. Evol. 4: Tolson, P. J. (1987). "Phylogenetics of the Boid Snake Genus Epicrates and Caribbean Vicariance Theory." Occ. Pap. Mus. Zoo!. Univ. Michigan (715): 1-68.
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